Start setup and choose as swap partition /dev/md1, choose as root partition /dev/md0, for home /dev/md2.
Ignore partition /dev/sd[ab]1 /dev/sd[ab]2 and continue with setup.
When it's time to choose a kernel choose a generic one, since huge kernels complains with initrd images, although they may work just fine.
Where
-k your kernel
-m your modules (-m ext3,ext4,reiserfs you might need a controller)
-f root filesystem
-r root partition
-R add support for RAID in initrd.
SMS generic kernels have built in support for ext2 ext3 ext4 and jfs.
run lilo and ignore the warnings.
exit and reboot your server.
-Using a huge kernel-
You can use a huge kernel without an initrd.bz if you like but to recognize raid arrays at boot you need to edit /etc/rc.d/rc.S and add between udev and lvm
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